Показать сокращенную информацию
Development of Nuclear Microsatellite Markers with Long (Tri-, Tetra-, Penta-, and Hexanucleotide) Motifs for Three Larch Species Based on the de novo Whole Genome Sequencing of Siberian Larch (Larix sibirica Ledeb.)
Автор | Oreshkova, N. V. | |
Автор | Bondar, E. I. | |
Автор | Putintseva, Yu. A. | |
Автор | Sharov, V. V. | |
Автор | Kuzmin, D. A. | |
Автор | Krutovsky, K. V. | |
Дата внесения | 2020-01-20T07:57:24Z | |
Дата, когда ресурс стал доступен | 2020-01-20T07:57:24Z | |
Дата публикации | 2019-04 | |
Библиографическое описание | Oreshkova, N. V. Development of Nuclear Microsatellite Markers with Long (Tri-, Tetra-, Penta-, and Hexanucleotide) Motifs for Three Larch Species Based on the de novo Whole Genome Sequencing of Siberian Larch (Larix sibirica Ledeb.) [Текст] / N. V. Oreshkova, E. I. Bondar, Yu. A. Putintseva, V. V. Sharov, D. A. Kuzmin, K. V. Krutovsky // Russian Journal of Genetics. — 2019. — Т. 55 (№ 4). — С. 444-450 | |
ISSN | 10227954 | |
URI (для ссылок/цитирований) | https://link.springer.com/article/10.1134/S1022795419040094 | |
URI (для ссылок/цитирований) | https://elib.sfu-kras.ru/handle/2311/129341 | |
Описание | Текст статьи не публикуется в открытом доступе в соответствии с политикой журнала. | |
Аннотация | Siberian larch (Larix sibirica Ledeb.) is one of the major boreal tree species in Eurasia and has a considerable economic and ecological value. Despite that importance, the development and use of microsatellite markers in this species remain limited. Microsatellite markers are considered to be a valuable tool for estimation of population diversity and structure. Availability of a draft reference assembly of the Siberian larch genome allowed us to identify 1015 microsatellite loci or simple sequence repeats (SSRs) with tri-, tetra-, penta-, and hexanucleotide motifs. For 60 of them PCR primers were designed and tested for amplification in L. sibirica and for their within-genus transferability to L. gmelinii (Rupr.) Rupr. and L. cajanderi Mayr. Here, we present a set of 14 reliable and polymorphic new nuclear SSR markers that can be used for further population genetic studies, breeding programs, and timber origin identification. | |
Тема | conifers | |
Тема | genetic diversity | |
Тема | heterozygosity | |
Тема | Larix | |
Тема | larch | |
Тема | microsatellite markers | |
Тема | SSR | |
Тема | whole-genome sequencing | |
Название | Development of Nuclear Microsatellite Markers with Long (Tri-, Tetra-, Penta-, and Hexanucleotide) Motifs for Three Larch Species Based on the de novo Whole Genome Sequencing of Siberian Larch (Larix sibirica Ledeb.) | |
Тип | Journal Article | |
Тип | Published Journal Article | |
Страницы | 444-450 | |
ГРНТИ | 34.15.23 | |
Дата обновления | 2020-01-20T07:57:24Z | |
DOI | 10.1134/S1022795419040094 | |
Институт | Институт фундаментальной биологии и биотехнологии | |
Подразделение | Кафедра биофизики | |
Подразделение | Базовая кафедра защиты и современных технологии мониторинга лесов | |
Журнал | Russian Journal of Genetics | |
Квартиль журнала в Scopus | Q4 | |
Квартиль журнала в Web of Science | Q4 |