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De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus
Автор | Moskalev, A. A. | |
Автор | Kudryavtseva, A. V. | |
Автор | Graphodatsky, A. S. | |
Автор | Beklemisheva, V. R. | |
Автор | Serdyukova, N. A. | |
Автор | Krutovsky, K. V. | |
Автор | Sharov, V. V. | |
Автор | Kulakovskiy, I. V. | |
Автор | Lando, A. S. | |
Автор | Kasianov, A. S. | |
Автор | Kuzmin, D. A. | |
Автор | Putintseva, Y. A. | |
Автор | Feranchuk, S. I. | |
Автор | Shaposhnikov, M. V. | |
Автор | Fraifeld, V. E. | |
Автор | Toren, D. | |
Автор | Snezhkina, A. V. | |
Автор | Sitnik, V. V. | |
Дата внесения | 2019-07-01T07:27:01Z | |
Дата, когда ресурс стал доступен | 2019-07-01T07:27:01Z | |
Дата публикации | 2017-12 | |
Библиографическое описание | Moskalev, A. A. De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus [Текст] / A. A. Moskalev, A. V. Kudryavtseva, A. S. Graphodatsky, V. R. Beklemisheva, N. A. Serdyukova, K. V. Krutovsky, V. V. Sharov, I. V. Kulakovskiy, A. S. Lando, A. S. Kasianov, D. A. Kuzmin, Y. A. Putintseva, S. I. Feranchuk, M. V. Shaposhnikov, V. E. Fraifeld, D. Toren, A. V. Snezhkina, V. V. Sitnik // BMC Evolutionary Biology: BMC Evolutionary Biology. — 2017. — 17:258. | |
ISSN | 14712148 | |
URI (для ссылок/цитирований) | https://bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-017-1103-z | |
URI (для ссылок/цитирований) | https://elib.sfu-kras.ru/handle/2311/110879 | |
Аннотация | Background: Gray whale, Eschrichtius robustus (E. robustus), is a single member of the family Eschrichtiidae, which is considered to be the most primitive in the class Cetacea. Gray whale is often described as a "living fossil". It is adapted to extreme marine conditions and has a high life expectancy (77 years). The assembly of a gray whale genome and transcriptome will allow to carry out further studies of whale evolution, longevity, and resistance to extreme environment. Results: In this work, we report the first de novo assembly and primary analysis of the E. robustus genome and transcriptome based on kidney and liver samples. The presented draft genome assembly is complete by 55% in terms of a total genome length, but only by 24% in terms of the BUSCO complete gene groups, although 10,895 genes were identified. Transcriptome annotation and comparison with other whale species revealed robust expression of DNA repair and hypoxia-response genes, which is expected for whales. Conclusions: This preliminary study of the gray whale genome and transcriptome provides new data to better understand the whale evolution and the mechanisms of their adaptation to the hypoxic conditions. | |
Тема | DNA repair | |
Тема | Eschrichtius robustus | |
Тема | Genome | |
Тема | Gray whale | |
Тема | Hypoxia-response | |
Тема | Transcriptome | |
Название | De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus | |
Тип | Journal Article | |
Тип | Journal Article Preprint | |
ГРНТИ | 34.15.23 | |
Дата обновления | 2019-07-01T07:27:01Z | |
DOI | 10.1186/s12862-017-1103-z | |
Институт | Институт фундаментальной биологии и биотехнологии | |
Институт | Институт космических и информационных технологий | |
Подразделение | Базовая кафедра защиты и современных технологии мониторинга лесов | |
Подразделение | Кафедра высокопроизводительных вычислений | |
Подразделение | Кафедра биофизики | |
Журнал | BMC Evolutionary Biology | |
Квартиль журнала в Scopus | Q1 | |
Квартиль журнала в Web of Science | Q2 |