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De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus
Background: Gray whale, Eschrichtius robustus (E. robustus), is a single member of the family Eschrichtiidae, which is considered to be the most primitive in the class Cetacea. Gray whale is often described as a "living ...
Development of Microsatellite Genetic Markers in Siberian larch (Larix sibirica Ledeb.) Based on the De Novo Whole Genome Sequencing
This special issue of the journal is devoted to the outstanding population geneticist Yuri Petrovich Altukhov, who paid much attention in his research to the development of molecular genetic markers for pop- ulation studies. ...
Mobile genetic elements explain size variation in the mitochondrial genomes of four closely-related Armillaria species
BackgroundSpecies in the genus Armillaria (fungi, basidiomycota) are well-known as saprophytes and pathogens on plants. Many of them cause white-rot root disease in diverse woody plants worldwide. Mitochondrial genomes ...
Stepwise large genome assembly approach: a case of Siberian larch (Larix sibirica Ledeb)
Background De novo assembling of large genomes, such as in conifers (~ 12–30 Gbp), which also consist of ~ 80% of repetitive DNA, is a very complex and computationally intense endeavor. One of the main problems in assembling ...